NGS and Supercomputing: life as a couple (II) & VII CBMSO NGS workshop

Scientific seminar
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27 Sep 2018
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Madrid
Next Generation Sequencing meets supercomputing

Next Generation Sequencing technology needs to be intimately linked to supercomputing to be able to process and store all the massive generated data. NGS technologies are essential these days on projects of all disciplines related to biology and medicine. The huge amount of data generated needs to be stored and processed in supercomputers to be kept for future use and to be understandable. All this needs to be well coordinated with a total interaction between NGS and supercomputing. In this workshop it will be presented how and where to archive NGS data, computational needs for small and medium research centers as well as for national infrastructures, how computing enterprises are moving to genomics and biomedicine, and some researchers will show their particular needs for their projects.

Venue

Ramón Areces Seminar Room.

Centro de Biología Molecular Severo Ochoa (CBMSO) CSIC-UAM.

Campus de Excelencia Internacional (CEI) UAM+CSIC. Cantoblanco, Madrid, Spain.

Location / How to arrive

Agenda

09:15 – 09:45    Registration

09:45 – 10:00    José Félix de Celis. Welcome
                          José Manuel González Sancho. Introduction to workshop.
10:00 – 10:30    Sandra González de la Fuente. “A CBMSO Genomics and NGS Facility experience: reassembling Leishmania infantum genome”
10:30 – 11:00    Ricardo Ramos Ruiz. “From samples to libraries. Perspective from a core facility”
11:00 – 11:20    Marta Renato - Alberto Luna. “Spanish Supercomputing Network (RES): resources and access”

11:20-11:50    Coffee Break

11:50 – 12:20    Sergi Beltrán Agulló. “Pilot projects for the implementation of Personalized Medicine”
12:20 – 12:50    Javier Herrero. “Clonal dynamics in childhood ALL using single cell whole genome sequencing”
12:50 – 13:20    Jordi Rambla de Argila. “Human data sharing: the state of the art”
13:20 – 13:40    Alicia Vela Boza. “One Roche in sample prep: unlock the potential of every sample”

13:40 – 15:00    Lunch

15:00 –15:30    Ave Tooming-Klunderud. “Long read sequencing at Norwegian Sequencing Centre”
15:30 – 16:00    Alba Blesa - José Berenguer. “Sequencing hitches & troubleshooting in Thermus thermophilus”
16:00 – 16:30    Emily Jane Richardson. “Finding and filtering errors in hybrid assemblies”

16:30 – 16:45    Coffe Break

16:45 – 17:15    José Javier Lucas. “Alternative splicing alterations in Huntington’s Disease”
17:15 – 17:45    Carlos Pedrós Alió. “An ocean full of microbes”
17:45 – 18:05    Albert Valls Badía. “Genomics and infrastructure evolution: storage, compute and cognitive systems”
18:05 – 18:30    Discussion. Practical case
18:30 – 18:45    Begoña Aguado. Closure

18:45 – 19:30    Networking drinks

Registration

The registration is free of charge and includes the coffee breaks, the lunch and the closure networking drinks during the workshop, but previous registration is mandatory.

 

REGISTRATION FORM

Further information

Download the programme in a pdf file.


Organizers:

Begoña Aguado Orea                baguado@cbm.csic.es

Fernando Carrasco Ramiro      fcarrasco@cbm.csic.es

Ramón Peiró Pastor                  rpeiro@cbm.csic.es

Genomics and NGS Facility, CBMSO (CSIC-UAM), Madrid, Spain

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